{"id":339,"date":"2018-12-27T19:32:34","date_gmt":"2018-12-27T19:32:34","guid":{"rendered":"http:\/\/darwin.eeb.uconn.edu\/uncommon-ground\/eeb348\/?p=339"},"modified":"2018-12-27T19:32:34","modified_gmt":"2018-12-27T19:32:34","slug":"the-genealogy-of-the-coalescent-at-one-locus-in-two-populations-with-migration-and-mutation","status":"publish","type":"post","link":"https:\/\/darwin.eeb.uconn.edu\/uncommon-ground\/eeb348\/2018\/12\/27\/the-genealogy-of-the-coalescent-at-one-locus-in-two-populations-with-migration-and-mutation\/","title":{"rendered":"The genealogy of the coalescent at one locus in two populations with migration and mutation"},"content":{"rendered":"

I just posted another R Shiny application illustrating properties of the coalescent in two populations with mutation and migration. Unfortunately, to see this one, you’ll have to download the source from Github (app.R<\/a>) and run it in your local version of R. It’s not difficult, but it’s less convenient than running it on shinyapps.io. The problem arises because I use ggtree()<\/tt> to plot and color the tree. ggtree()<\/tt> is a BioConductor<\/a> package, and I’m running into an error installing it in the application package. If I can’t figure it out, I may install a version of R Studio Server<\/a> here and host it locally.<\/p>\n

Here’s how to run the application in your local version of R:<\/p>\n