Earlier this week a paper Bruce Weir and I wrote appeared in Nature Reviews Genetics. As the title suggests, it should help anyone who cares understand more about defining, estimating, and interpreting FST. If you click on the link, you'll go to the NRG website where you can read this abstract. You'll need a subscription to NRG to read the whole thing.
Wright's F-statistics, and especially FST, provide important insights into the evolutionary processes that influence the structure of genetic variation within and among populations, and they are among the most widely used descriptive statistics in population and evolutionary genetics. Estimates of FST can identify regions of the genome that have been the target of selection, and comparisons of FST from different parts of the genome can provide insights into the demographic history of populations. For these reasons and others, FST has a central role in population and evolutionary genetics and has wide applications in fields that range from disease association mapping to forensic science. This Review clarifies how FST is defined, how it should be estimated, how it is related to similar statistics and how estimates of FST should be interpreted.



Hi Kent, The link goes to the Error 404 of doom page.
I'll look for it on the NRG website, but thought you should know. Looking forward to reading it! Knee deep in microsats and gene sequences right now.
Oops! Sorry about that. I've fixed the link so that it goes to the right place now. (I screwed up the DOI in my original post.)