#FileID 901540162 #bychromosome /* One way to make comment on data source file */ -type position //default is interval -function 1 //default is 1 -Units cM //default is cM -chromosomes 1 -maximum 12 -named yes -start -Chromosome C1 // Another way to comment Mk01_01 0.0000 Mk01_02 37.8000 Mk01_03 49.1000 Mk01_04 59.8000 Mk01_05 62.8000 Mk01_06 86.7000 Mk01_07 92.7000 Mk01_08 108.2000 Mk01_09 112.5000 Mk01_10 134.6000 Mk01_11 140.0000 Mk01_12 149.8000 -stop --------------------------------------------------- #bycross -SampleSize 171 //Individual number -Cross SF2 //default is B1 -traits 1 -missingtrait . //default is . and may use -losttrait -case yes -TranslationTable //can omit AA 2 2 //default 2 Aa 1 1 //default 1 aa 0 0 //default 0 A- 12 12 //default 12 a- 10 10 //default 10 -- -1 -1 //default -1 -start markers Mk01_01 2 1 1 1 0 1 2 0 1 0 1 2 2 1 1 1 1 2 0 2 0 2 1 1 2 1 0 0 2 2 1 2 1 1 1 0 1 1 1 0 1 2 2 1 2 0 0 0 1 2 1 2 1 1 0 1 0 1 1 0 1 2 2 0 1 1 1 0 1 0 2 1 1 1 2 1 2 2 0 2 0 0 1 1 2 0 1 1 1 1 1 2 1 1 1 2 1 0 1 0 0 2 2 0 1 0 1 2 0 2 1 2 2 2 1 1 2 0 1 0 0 1 1 2 2 0 1 1 1 1 1 2 0 0 0 2 1 0 0 1 1 1 0 2 1 1 1 0 1 1 1 0 1 1 2 1 0 1 1 1 1 2 1 1 1 1 2 1 0 1 2 Mk01_02 1 1 2 0 0 0 2 0 0 1 1 1 1 1 2 1 1 2 0 1 1 1 1 1 2 2 1 1 1 0 2 1 0 1 1 1 2 1 1 1 1 2 2 2 2 0 0 0 2 2 1 1 2 2 1 0 0 1 0 1 1 2 1 1 0 1 1 2 2 1 2 2 0 1 1 1 2 1 1 1 1 0 2 1 2 1 1 1 1 0 1 1 1 1 1 1 0 2 1 0 0 2 2 0 1 1 1 1 1 2 0 1 2 1 0 1 2 2 2 1 2 2 0 2 2 0 2 2 2 1 1 2 1 0 1 2 2 1 0 2 1 1 1 0 1 1 1 0 1 1 1 1 1 1 2 2 0 1 1 1 1 1 1 2 1 0 2 0 1 0 2 Mk01_03 0 1 2 0 1 0 2 0 1 1 2 1 2 1 2 1 1 2 0 1 1 1 1 1 1 2 1 2 1 0 2 1 0 1 1 1 2 1 1 1 1 2 2 2 2 0 0 0 2 2 1 1 2 2 2 1 0 0 0 1 1 2 0 1 0 1 1 2 2 1 2 1 0 1 0 1 1 1 1 0 2 0 1 1 1 1 1 1 1 0 1 1 1 1 2 0 0 2 1 0 0 2 2 0 1 1 1 1 1 2 0 1 2 1 0 2 1 2 1 1 2 1 0 1 2 0 2 1 2 1 1 1 1 1 1 2 1 1 0 1 1 2 1 0 1 1 1 0 1 1 0 1 1 1 2 1 0 1 2 1 2 1 1 2 1 0 1 0 1 0 1 Mk01_04 0 1 2 0 1 0 1 0 1 1 2 1 1 2 2 1 1 2 0 1 1 1 1 2 1 2 1 2 1 0 2 1 1 0 1 1 2 1 0 1 1 2 2 2 1 0 0 0 1 2 1 0 2 2 2 1 0 1 0 1 1 2 0 1 0 1 1 2 2 2 1 1 2 0 0 1 1 1 1 1 2 1 1 1 1 1 0 1 0 0 1 1 1 1 2 0 1 2 1 1 0 2 2 0 1 1 2 1 2 2 0 0 2 0 0 2 1 2 1 1 2 1 1 1 1 0 1 1 2 0 1 0 1 2 2 2 1 1 0 1 1 2 1 0 1 1 2 0 1 1 0 1 1 1 2 1 0 1 2 1 2 1 1 2 1 0 1 0 1 1 1 Mk01_05 0 1 2 0 1 0 1 0 1 1 2 1 1 2 2 1 1 2 0 1 1 1 1 2 1 2 1 2 1 0 2 1 1 0 1 1 2 1 0 1 1 2 2 2 1 0 0 0 1 2 1 0 2 2 2 1 0 1 0 1 1 2 0 1 0 1 1 2 2 2 1 1 0 2 0 1 1 1 1 1 2 1 1 1 1 1 0 1 0 0 1 0 1 1 2 0 1 2 1 1 0 2 2 0 1 1 2 1 2 2 0 0 2 0 0 2 1 2 1 1 2 1 1 1 1 0 1 1 2 0 1 0 1 2 2 2 1 1 0 1 1 2 1 0 1 1 2 0 1 1 0 1 0 1 2 1 0 1 2 1 1 1 1 2 1 0 1 0 1 1 0 Mk01_06 0 2 1 0 1 1 0 0 1 1 1 1 2 2 2 1 1 2 0 1 0 0 1 1 1 2 1 1 0 1 2 0 2 0 2 0 1 1 0 0 1 2 2 1 0 0 1 1 1 2 1 0 2 2 2 2 0 1 1 1 1 2 0 1 1 1 1 2 1 2 2 2 1 1 1 1 0 1 1 1 1 1 2 1 2 0 0 1 0 0 1 0 1 1 2 0 1 1 1 1 1 2 2 1 1 1 0 1 2 1 1 1 2 0 0 0 1 2 2 2 2 1 1 2 2 0 1 1 2 0 1 1 1 2 1 2 1 0 0 2 1 2 0 0 1 2 2 0 0 0 0 1 0 1 0 1 0 1 2 1 1 1 1 2 1 0 0 1 0 1 1 Mk01_07 0 2 1 0 1 1 0 0 1 1 1 1 2 2 2 1 0 2 0 1 1 0 2 1 1 0 1 1 0 1 2 1 2 0 2 0 1 1 0 0 1 2 2 1 1 1 1 1 1 2 1 0 2 2 2 2 1 1 2 1 1 2 0 1 1 1 1 2 1 1 2 2 1 0 1 1 0 1 1 2 1 0 2 1 2 0 0 1 0 0 1 0 1 0 2 1 1 1 1 1 1 2 2 1 1 2 0 1 2 1 1 1 2 0 0 0 1 2 2 2 2 1 1 2 2 0 1 1 2 0 0 1 1 2 1 2 1 1 0 2 1 1 0 0 1 2 2 0 0 0 0 1 1 0 0 1 0 1 0 1 1 1 1 2 2 0 0 1 1 1 1 Mk01_08 1 2 1 0 1 1 0 1 0 1 1 1 1 2 2 1 0 1 1 1 1 0 2 0 1 0 2 0 0 1 2 2 2 0 2 0 1 1 0 0 1 2 2 1 1 1 1 1 1 2 2 1 2 2 0 2 1 1 2 1 1 1 0 1 2 1 1 1 1 0 2 2 1 0 1 1 1 2 1 2 0 1 2 1 2 0 0 2 1 0 1 0 2 0 2 2 1 2 1 1 1 2 2 2 1 2 0 2 2 0 1 1 2 1 0 0 1 2 1 2 2 1 1 2 1 0 1 1 2 0 0 1 1 1 1 2 1 1 0 2 1 0 0 1 1 2 2 1 1 0 0 1 1 0 0 1 0 1 0 1 0 0 2 2 1 0 0 1 1 1 1 Mk01_09 1 2 1 0 1 1 0 1 0 0 1 1 1 1 2 1 0 0 1 1 1 0 2 0 1 0 2 0 0 1 2 1 1 1 2 0 1 1 0 0 1 2 2 1 1 1 1 1 1 2 1 0 2 2 1 2 1 1 2 0 1 1 0 0 2 1 1 1 1 0 2 2 1 0 1 1 1 2 1 2 0 1 2 1 2 0 0 2 1 0 1 0 2 0 2 2 1 1 1 2 1 2 2 2 1 2 0 1 2 1 1 1 2 1 0 0 1 2 1 1 2 1 1 2 1 0 1 1 2 0 0 1 1 1 1 2 1 1 0 2 0 1 0 1 1 2 2 1 1 0 1 1 1 0 0 1 0 1 0 1 0 0 2 2 1 0 0 1 1 1 1 Mk01_10 1 0 2 1 1 0 1 1 1 0 1 1 1 1 2 1 0 0 1 1 0 0 2 0 1 0 2 1 0 1 2 1 1 1 2 0 1 2 0 1 1 2 1 1 1 2 1 1 1 2 1 0 2 2 1 1 0 1 1 0 2 1 1 0 2 1 0 1 1 1 1 1 1 0 1 0 2 2 2 2 0 1 2 1 1 1 0 1 1 0 2 0 2 1 1 2 0 0 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 0 1 2 1 2 2 1 0 1 1 1 2 1 2 0 1 2 1 1 1 1 1 1 1 2 1 2 0 0 2 2 2 1 1 0 1 2 1 1 2 0 0 1 1 2 0 0 2 1 1 1 1 1 1 1 0 Mk01_11 0 0 2 2 1 0 2 1 1 0 1 1 1 1 2 1 0 0 1 0 0 0 2 0 1 0 2 1 1 1 2 1 1 1 2 0 1 2 0 1 1 2 1 2 1 1 2 1 2 2 1 0 2 2 1 1 0 1 1 0 2 1 1 1 2 1 0 2 1 1 1 1 1 0 1 0 2 2 2 2 0 1 2 1 1 1 0 1 2 0 2 0 2 1 1 2 0 0 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 0 0 1 2 1 2 2 1 0 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 2 1 2 1 0 2 2 2 1 1 0 2 2 1 1 2 0 0 1 1 1 0 0 2 1 1 2 1 1 1 1 0 Mk01_12 0 1 2 2 1 0 2 2 1 0 0 1 1 1 2 1 0 0 1 0 0 0 2 0 1 0 2 1 1 1 2 1 0 1 2 0 2 2 0 1 1 2 1 2 1 1 1 1 1 2 1 0 2 2 1 1 0 1 1 2 2 1 1 1 2 1 0 2 1 1 1 0 2 1 1 0 2 2 2 2 0 1 2 1 1 1 0 1 2 0 1 1 1 2 0 2 0 1 1 2 1 0 2 1 0 1 1 1 1 1 1 1 1 1 0 1 1 2 0 2 2 1 0 1 1 1 1 1 2 0 1 2 1 1 1 0 0 0 1 2 1 2 1 0 2 2 2 1 1 0 1 1 2 1 2 0 0 1 1 1 0 0 2 1 1 2 1 2 1 1 0 -stop markers -start traits Trait_1 6.2500 3.0000 3.0000 4.0000 3.0000 3.7500 8.2500 2.5000 4.2500 4.5000 6.0000 3.2500 5.5000 7.2500 5.5000 4.0000 2.7500 7.5000 6.0000 4.7500 2.7500 5.5000 1.7500 5.0000 4.0000 4.0000 2.0000 3.0000 4.7500 3.7500 5.7500 8.0000 3.0000 2.2500 3.5000 6.7500 2.2500 3.5000 6.2500 1.5000 3.5000 4.0000 6.2500 3.0000 7.2500 1.7500 7.2500 1.2500 7.2500 6.7500 6.5000 2.7500 3.5000 4.2500 3.0000 6.2500 1.5000 3.2500 4.7500 2.2500 2.7500 5.0000 3.0000 5.0000 3.2500 6.7500 6.2500 1.2500 2.7500 3.0000 8.2500 3.5000 2.7500 7.2500 5.7500 5.2500 6.7500 6.0000 1.5000 3.5000 5.0000 5.0000 3.7500 4.0000 4.5000 1.5000 7.5000 3.2500 7.5000 2.7500 5.5000 2.5000 3.0000 5.0000 3.0000 2.7500 2.7500 3.5000 7.0000 1.7500 2.7500 3.5000 6.7500 2.7500 3.0000 2.7500 2.7500 5.7500 2.7500 6.5000 1.7500 4.7500 4.7500 3.5000 5.5000 6.5000 5.0000 4.7500 2.2500 2.0000 4.2500 4.2500 6.0000 5.2500 6.0000 3.5000 2.2500 3.0000 4.5000 4.0000 8.2500 4.7500 1.5000 1.2500 2.2500 6.7500 7.5000 2.5000 2.0000 2.5000 2.5000 7.5000 2.0000 4.0000 2.7500 3.0000 3.7500 6.5000 4.2500 3.5000 1.7500 4.0000 5.2500 2.5000 7.2500 2.7500 1.0000 7.5000 4.5000 5.7500 4.5000 4.5000 3.5000 5.5000 1.7500 5.7500 4.0000 3.5000 5.5000 3.0000 5.7500 -stop traits -quit -end