Readings
This page provides a consolidated list of readings for the course. If you want a complete bibliography of the readings associated with each lecture, you'll need to wait until the end of the semester. If you're trying to find a particular reference and don't remember which lecture it was associated with, you should be able to find it here.
Following each reference you'll find a "link" button that will take you to an on-line version of the article. Most of them are from journals that require a subscription, but the ones I link to are ones to which the University of Connecticut subscribes. So if you're planning to follow these links from within the UConn.Edu domain, you shouldn't have any problem. If you try to follow the links from off campus, you may not be able to see the references. If you want/need to see the references from off campus, you can use your NetID to access the UConn VPN. Once you've connected to the VPN, you should be able to follow the links to your heart's content.
Balding, D. 2006. A tutorial on statistical methods for population association studies. Nature Reviews Genetics 7:781-791. link
Evanno, G., S. Regnaut, et al. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14:2611-2620. link
Futschik, A. and C. Schlotterer. 2010. The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples. Genetics 186:207-218. link
Gompert, Z., M. L. Forister, et al. 2010. Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies. Molecular Ecology 19:2455-2473. link
Guo, F., D. K. Dey, and K. E. Holsinger. 2009. A Bayesian hierarchical model for analysis of single-nucleotide polymorphisms diversity in multilocus, multipopulation samples. Journal of the American Statistical Association 104:142-154 link
Hellmann, I., Y. Mang, et al. 2008. Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals. Genome Research 18:1020-1029. link
Holsinger, K. E. 2010. Next generation population genetics and phylogeography. Molecular Ecology 19:2361-2363. link
Holsinger, K. E., and L. E. Wallace. 2004. Bayesian approaches for the analysis of population genetic structure: an example from Platanthera leucophaea (Orchidacdae). Molecular Ecology 13:887-894. link
Holsinger, K. E., and B. S. Weir. 2009. Genetics in geographically structured populations: defining, estimating, and interpreting FST. Nature Reviews Genetics 10:639-650 link
Pritchard, J. K., M. Stephens, et al. 2000. Inference of Population Structure Using Multilocus Genotype Data. Genetics 155:945-959. link
Prunier, R. and K. E. Holsinger. 2010. Was it an explosion? Using population genetics to explore the dynamics of a recent radiation within Protea (Proteaceae L.). Molecular Ecology 19:3968-3980. link
Stephens, M. and D. Balding. 2009. Bayesian statistical methods for genetic association studies. Nature Reviews Genetics 10:681-690 link
Templeton, A. R. 2004. Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology 13:789-809 link
Weir, B. S. and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370. link
Weir, B. S. and W. G. Hill. 2002. Estimating F-statistics. Annual Review of Genetics 36:721-750. link