The basic approach to the analysis is either to use a linear
regression of offspring phenotype on parental phenotype, which as
we'll see estimates
, or to use a nested analysis of
variance. One of the most complete designs is a full-sib, half-sib
design in which each male sires offspring from several dams but each
dam mates with only one sire.
The offspring of a single dam are full-sibs (they are nested within dams). Differences among the offspring of dams indicates that there are differences in maternal ``genotype'' in the trait being measured.2
The offspring of different dams mated to a single sire are half-sibs. Differences among the offspring of sires indicates that thee are differences in paternal ``genotype'' in the trait being measured.3
This design has the advantage that it allows both additive and dominance components of the genetic variance to be estimated.