- ... snails.1
- It may
well be characteristic of many hermaphroditic animal parasites. You
should also know that I just lied. I do that a lot, so you should be
on the watch for it. In this case I lied because the form of
self-fertilization I'm going to describe actually isn't the most
extreme form of selfing possible. That honor belongs to gametophytic
self-fertilization in homosporous plants. The offspring of
gametophytic self-fertilization are uniformly homozygous at every
locus in the genome. For more information, if you're interested,
see [1]
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- ... changing.2
- This is analogous to
stopping the calculation and re-calculation of allele frequencies in
the EM algorithm when the allele frequency estimates stop changing.
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- ... course.3
- Unfortunately, I'll also be
using hats to denote estimates of unknown parameters, as I did when
discussing maximum-likelihood estimates of allele frequencies. I
apologize for using the same notation to mean different things, but
I'm afraid you'll have to get used to figuring out the meaning from
the context. Believe me. Things are about to get a lot worse. Wait
until I tell you how many different ways population geneticists use
a parameter
that is commonly called the inbreeding coefficient.
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- ...
observe4
- Important note: I'm assuming that we know the
actual genotype frequencies in the population here. In practice, we
don't know them. We have to estimate them from the sample, so the
frequency of heterozygotes in our sample isn't necessarily the same
as the frequency of heterozygotes in our populations. Calling
is, therefore, a little misleading, but that's what we'll do
for the time being.
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- ... expectations.5
can be negative if there are
more heterozygotes than expected, as might be the case if
cross-homozygote matings are more frequent than expected at random.
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- ... defined.6
- See paragraphs above
describing the population and equilibrium inbreeding coefficient.
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- ... history.7
- Notice that we could have
had each allele mutate independently to
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- ...
descent.8
- Systematists in the audience will recognize this as
the problem of homoplasy.
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- ... descent.9
- Notice that if
we adopt this definition for
it can only take on values between 0
and 1. When used in the sense of a population or equilibrium
inbreeding coefficient, however,
can be negative.
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