- ... individuals.1
- Notice that once we start
talking about genetic drift, we have to specify the size of the
population.
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- ... smaller,2
- More about that later.
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- ... equations:3
- I know. I'm weird. I actually get a kick
out of writing equations!
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- ... we4
- Or at least the
weird ones among us
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- ... show,5
- Ask me, if you're
really interested.
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- ... equations?6
- It's not just
that I'm crazy, although I am a little crazy.
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- ... one.7
- You obviously can't lose all of them
unless the population becomes extinct.
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- ... memory.8
- Technically, we've
described a Markov chain with a finite state space, but I doubt that
you really care about that.
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- ... row.9
- Of course, if you've just tossed 25
heads in a row, you could be forgiven for having your doubts about
whether the coin is actually fair.
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- ...
size,10
- Actually, we'll encounter a way that isn't quite so
hard in a few lectures when we get to the coalescent.
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- ... frequency.11
- Notice that
this equation only applies to the case of one-locus with two
alleles, although the principle applies to any number of alleles.
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- ... population.12
- Remember that
I use the abbreviation ibd to mean identical by descent.
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- ...
present.13
- This will hold true even if there is strong
selection for keeping alleles in the population. Selection can't
prevent loss of diversity, only slow it down.
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- ... sexes.14
- How
could there be separate sexes if there can be self-fertilization?
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- ... variable.15
- More about this
later.
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- ... in?16
- OK,
OK. They will probably be violated in every case we're
interested in.
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- ...
defined.17
- There are actually more than two ways, but we're
only going to talk about two.
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- ... remember18
- You probably won't, so I'll remind you
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- ...
equation,19
- As if that will make it any clearer. Does anyone
actually read these footnotes?
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- ... next.20
- It's even worse than that. When
the population size is changing, it's not clear that any of the
available adjustments to produce an effective population size are
entirely satisfactory. Well, that's not entirely true either. Fu et
al. [2] show that there is a reasonable definition
in one simple case when the population size varies, and it happens
to correspond to the solution presented below.
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- ... out.21
- If you're interested in a
comprehensive list of formulas relating various demographic
parameters to effective population size, take a look
at [1, p. 362]. They provide a pretty
comprehensive summary and a number of derivations.
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- ... pieces.22
- Remembering, of
course, that
is the probability that two alleles drawn
at random are identical by descent.
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- ... fact23
- Well known to some of us at least.
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- ... large,24
- So that there
reciprocals are small
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- ... fact25
- Are we ever going to run out of well-known
facts? Probably not.
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- ... you.26
- The details are in [1], if
you're interested.
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- ...
population.27
- The calculation is really easy, and I'd be happy
to show it to you if you're interested.
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