You'll want to download a copy of QTL Cartographer for the next problem. More specifically, you'll want to download a copy of WinQTLCart.1 Although there's a version available for Linux and Mac OS X, it requires you to use a command line interface that's a lot less convenient. If you'd really like to try the analyses with that interface, I'll do what I can to help, but I have to confess to not being very familiar with it. You may be on your own.
Oh, there's also a nice PDF manual for WinQTLCart available.
1Download the version that's linked to in the yellow box near the bottom of the page. You're welcome to try the unpublished new release, if you'd like, but I haven't tried it yet, and I don't know how it differs.
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