Population Genetics

Ecology and Evolutionary Biology 348

Spring, 1999

Software Links

• BUGS -- Bayesian Inference Using Gibbs Sampling
• GDA -- Genetic Data Analysis
• Genestat PC (Note: This is a direct FTP link to the ZIP file on my ftp server. You may need to right click on this link and choose "Save as:" from the menu that pops up. The program is no longer supported.)
• Mapmaker and MapmakerQTL -- This is an FTP archive at the Whitehead Institute for Biomedical Research/MIT Center for Genome Research. Fetch the file "FTP.ME" to figure out what files you'll need for your computer system. I've converted the Mapmaker v3.0 tutorial and the Mapmaker/QTL v1.1 tutorial to PDF format.
• SNAP -- for analysis of synonymous and non-synonymous differences in nucleotide sequences
• PHYLIP home page (including links to executables for PC's and Mac's)