Molecular evolution and phylogeny

You'll find links to the data below in two different formats. The PHYLIP interleaved format is ready for direct input into PHYLIP (for parsimony analysis). The TABLE format is ready for direct input into the synonymous/non-synonymous substitution calculation on my server. It will produce distance matrices closer to being ready to use in PHYLIP than will the server at the HIV Sequence Database.

Data

• PHYLIP (interleaved format)
• TABLE

Analysis

• PHYLIP server
• Analysis of synonymous versus non-synonymous substitutions (local server: produces tables ready for input into PHYLIP distance programs, requires sequence in TABLE format)
• Analysis of synonymous versus non-synonymous substitutions (HIV Sequence Database: does not produce tables ready for input into PHYLIP distance programs, accepts sequence data in a variety of formats)